B260

Recent Publications

All known publications ...
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http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Lindenhofer, D. ; Bauman, J. R. ; Hawkins, J. A.DKFZ* ; Fitzgerald, D. ; Yildiz, U. ; Jung, H. ; Korosteleva, A. ; Marttinen, M. ; Kueblbeck, M. ; Zaugg, J. B. ; Noh, K.-M. ; Dietrich, S. ; Huber, W. ; Stegle, O.DKFZ* ; Steinmetz, L. M.
Functional phenotyping of genomic variants using joint multiomic single-cell DNA-RNA sequencing.
Nature methods nn, nn (2025) [10.1038/s41592-025-02805-0]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Zhang, Z. ; Li, W. ; Zhan, Q. ; Aillaud, M. ; Botey-Bataller, J. ; Zoodsma, M. ; Ter Horst, R. ; Joosten, L. A. B. ; Bock, C. ; Schulte, L. N. ; Xu, C.-J. ; Netea, M. G. ; Bonder, M. J.DKFZ* ; Li, Y.
Unveiling genetic signatures of immune response in immune-related diseases through single-cell eQTL analysis across diverse conditions.
Nature Communications 16(1), 7134 (2025) [10.1038/s41467-025-61192-4]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Korshevniuk, M. ; Westra, H.-J. ; Oelen, R. ; van der Wijst, M. G. P. ; Franke, L. ; Bonder, M. J.DKFZ* ; Consortium, s.-e. (Collaboration Author) ; Alquicira-Hernández, J. (Contributor) ; Kaptijn, D. (Contributor) ; Korshevniuk, M. (Contributor) ; Lee, J. T. H. (Contributor) ; Michielsen, L. (Contributor) ; Neavin, D. (Contributor) ; Oelen, R. (Contributor) ; Ripoll-Cladellas, A. (Contributor) ; Vochterloo, M. (Contributor) ; Ando, Y. (Contributor) ; Bayaraa, O. (Contributor) ; van Blokland, I. (Contributor) ; Dieng, M. M. (Contributor) ; Gordon, M. G. (Contributor) ; Groot, H. E. (Contributor) ; van der Harst, P. (Contributor) ; Hon, C.-C. (Contributor) ; Idaghdour, Y. (Contributor) ; Manikanda, V. (Contributor) ; Moody, J. (Contributor) ; Nawijn, M. C. (Contributor) ; Okada, Y. (Contributor) ; Stegle, O. (Contributor)DKFZ* ; Park, W.-Y. (Contributor) ; Rajagopalan, D. (Contributor) ; Shahin, T. (Contributor) ; Shin, J. W. (Contributor) ; Trynka, G. (Contributor) ; Westra, H.-J. (Contributor) ; Yazar, S. (Contributor) ; Ye, J. (Contributor) ; Hemberg, M. (Contributor) ; Mahfouz, A. (Contributor) ; Melé, M. (Contributor) ; Powell, J. E. (Contributor) ; Franke, L. (Contributor) ; van der Wijst, M. G. P. (Contributor) ; Bonder, M. J. (Contributor)
Optimized summary-statistic-based single-cell eQTL meta-analysis.
Scientific reports 15(1), 28407 (2025) [10.1038/s41598-025-08808-3]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Breinig, M. ; Lomakin, A. (First author)DKFZ* ; Heidari, E. (First author)DKFZ* ; Ritter, M.DKFZ* ; Rukhovich, G.DKFZ* ; Böse, L. ; Butthof, L. ; Wendler-Link, L. ; Wiethoff, H. ; Poth, T. ; Sahm, F.DKFZ* ; Schirmacher, P. ; Stegle, O.DKFZ* ; Gerstung, M.DKFZ* ; Tschaharganeh, D. F. (Last author)DKFZ*
Integrated in vivo combinatorial functional genomics and spatial transcriptomics of tumours to decode genotype-to-phenotype relationships.
Nature biomedical engineering nn, nn (2025) [10.1038/s41551-025-01437-1]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Logsdon, G. A. ; Ebert, P. ; Audano, P. A. ; et al
Complex genetic variation in nearly complete human genomes.
Nature 644(8076), 430-441 (2025) [10.1038/s41586-025-09140-6]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Kamboj, O. ; Park, J. ; Stegle, O.DKFZ* ; Hamprecht, F. A.
From spots to cells: Cell segmentation in spatial transcriptomics with BOMS.
PLOS ONE 20(6), e0311458 - (2025) [10.1371/journal.pone.0311458]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Galmozzi, C. V. ; Tippmann, F. ; Wruck, F. ; Auburger, J. J. ; Kats, I.DKFZ* ; Guennigmann, M. ; Till, K. ; O Brien, E. P. ; Tans, S. J. ; Kramer, G. ; Bukau, B.DKFZ*
Proteome-wide determinants of co-translational chaperone binding in bacteria.
Nature Communications 16(1), 4361 (2025) [10.1038/s41467-025-59067-9]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Aivazidis, A. ; Memi, F. ; Kleshchevnikov, V. ; Er, S. ; Clarke, B.DKFZ* ; Stegle, O.DKFZ* ; Bayraktar, O. A.
Cell2fate infers RNA velocity modules to improve cell fate prediction.
Nature methods 22(4), 698-707 (2025) [10.1038/s41592-025-02608-3]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article D'Altri, T. ; Freeberg, M. A. ; Curwin, A. J. ; Alonso, A. ; Freitas, A. T. ; Capella-Gutierrez, S. ; Gadelha, L.DKFZ* ; Hagwall, A. ; Hovig, E. ; Kerry, G. ; Kirli, K.DKFZ* ; Kochel, K. ; Kohlbacher, O. ; Korbel, J. O. ; Leinonen, J. ; Marciniak, B. ; Oliveira, J. S. ; Petersen, K. ; Silva, M. J. ; Stegle, O.DKFZ* ; Valencia, A. ; Viklund, J. ; Guigo, R. ; Parkinson, H. ; Navarro, A. ; Rambla, J. ; Keane, T. M.
The Federated European Genome-Phenome Archive as a global network for sharing human genomics data.
Nature genetics 57, 481–485 (2025) [10.1038/s41588-025-02101-9]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article (Erratum/Correction) Logsdon, G. A. ; Ebert, P. ; Audano, P. A. ; et al
Author Correction: Complex genetic variation in nearly complete human genomes.
Nature nn, nn (2025) [10.1038/s41586-025-09547-1]2025   BibTeX | EndNote: XML, Text | RIS

All known publications ...
Download: BibTeX | EndNote XML,  Text | RIS |