Home > Publications database > Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children. > print |
001 | 125485 | ||
005 | 20240228143310.0 | ||
024 | 7 | _ | |a pmid:27013061 |2 pmid |
024 | 7 | _ | |a pmc:PMC4812527 |2 pmc |
024 | 7 | _ | |a altmetric:6309402 |2 altmetric |
037 | _ | _ | |a DKFZ-2017-01611 |
041 | _ | _ | |a eng |
082 | _ | _ | |a 570 |
100 | 1 | _ | |a Bauer, Tobias |0 0000-0002-4961-3639 |b 0 |e First author |
245 | _ | _ | |a Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children. |
260 | _ | _ | |a Heidelberg |c 2016 |b EMBO Press |
336 | 7 | _ | |a article |2 DRIVER |
336 | 7 | _ | |a Output Types/Journal article |2 DataCite |
336 | 7 | _ | |a Journal Article |b journal |m journal |0 PUB:(DE-HGF)16 |s 1521722221_15724 |2 PUB:(DE-HGF) |
336 | 7 | _ | |a ARTICLE |2 BibTeX |
336 | 7 | _ | |a JOURNAL_ARTICLE |2 ORCID |
336 | 7 | _ | |a Journal Article |0 0 |2 EndNote |
520 | _ | _ | |a Epigenetic mechanisms have emerged as links between prenatal environmental exposure and disease risk later in life. Here, we studied epigenetic changes associated with maternal smoking at base pair resolution by mapping DNA methylation, histone modifications, and transcription in expectant mothers and their newborn children. We found extensive global differential methylation and carefully evaluated these changes to separate environment associated from genotype-related DNA methylation changes. Differential methylation is enriched in enhancer elements and targets in particular 'commuting' enhancers having multiple, regulatory interactions with distal genes. Longitudinal whole-genome bisulfite sequencing revealed that DNA methylation changes associated with maternal smoking persist over years of life. Particularly in children prenatal environmental exposure leads to chromatin transitions into a hyperactive state. Combined DNA methylation, histone modification, and gene expression analyses indicate that differential methylation in enhancer regions is more often functionally translated than methylation changes in promoters or non-regulatory elements. Finally, we show that epigenetic deregulation of a commuting enhancer targeting c-Jun N-terminal kinase 2 (JNK2) is linked to impaired lung function in early childhood. |
536 | _ | _ | |a 312 - Functional and structural genomics (POF3-312) |0 G:(DE-HGF)POF3-312 |c POF3-312 |f POF III |x 0 |
588 | _ | _ | |a Dataset connected to PubMed, |
650 | _ | 7 | |a Chromatin |2 NLM Chemicals |
650 | _ | 7 | |a Histones |2 NLM Chemicals |
650 | _ | 7 | |a Mitogen-Activated Protein Kinase 9 |0 EC 2.7.1.24 |2 NLM Chemicals |
700 | 1 | _ | |a Trump, Saskia |b 1 |
700 | 1 | _ | |a Ishaque, Naveed |0 P:(DE-He78)4096eeffdfc73b75e8ba63dc621a017d |b 2 |u dkfz |
700 | 1 | _ | |a Thürmann, Loreen |b 3 |
700 | 1 | _ | |a Gu, Lei |b 4 |
700 | 1 | _ | |a Bauer, Mario |b 5 |
700 | 1 | _ | |a Bieg, Matthias |0 P:(DE-He78)e247efc0264a7b0e4bae09804002d4e1 |b 6 |u dkfz |
700 | 1 | _ | |a Gu, Zuguang |0 P:(DE-He78)73316f3cd41c27508dbb6f4c5e7e7a8a |b 7 |u dkfz |
700 | 1 | _ | |a Weichenhan, Dieter |0 P:(DE-He78)ff4024f7bc236e7897d9c18ee19c451f |b 8 |u dkfz |
700 | 1 | _ | |a Mallm, Jan-Philipp |0 P:(DE-He78)697cb039ca08f3b7e5a2a52dbf020b46 |b 9 |u dkfz |
700 | 1 | _ | |a Röder, Stefan |b 10 |
700 | 1 | _ | |a Herberth, Gunda |b 11 |
700 | 1 | _ | |a Takada, Eiko |b 12 |
700 | 1 | _ | |a Mücke, Oliver |0 P:(DE-He78)aaef108f2a1ba0a78fff60ac60d3368c |b 13 |u dkfz |
700 | 1 | _ | |a Winter, Marcus |b 14 |
700 | 1 | _ | |a Junge, Kristin M |b 15 |
700 | 1 | _ | |a Grützmann, Konrad |b 16 |
700 | 1 | _ | |a Rolle-Kampczyk, Ulrike |b 17 |
700 | 1 | _ | |a Wang, Qi |0 P:(DE-HGF)0 |b 18 |
700 | 1 | _ | |a Lawerenz, Christian |0 P:(DE-He78)5398550c21bc4ce3b0ff670b04150334 |b 19 |u dkfz |
700 | 1 | _ | |a Borte, Michael |b 20 |
700 | 1 | _ | |a Polte, Tobias |b 21 |
700 | 1 | _ | |a Schlesner, Matthias |0 P:(DE-He78)f2a782242acf94a3114d75c45dc75b37 |b 22 |u dkfz |
700 | 1 | _ | |a Schanne, Michaela |0 P:(DE-He78)7ec2e98d8e1badc97076e799a99f5a38 |b 23 |u dkfz |
700 | 1 | _ | |a Wiemann, Stefan |0 P:(DE-He78)f6bebe05e7a748d3cbf9f59659567d52 |b 24 |u dkfz |
700 | 1 | _ | |a Geörg, Christina |0 P:(DE-He78)3f888debb126ff36634df058ccaaf2b4 |b 25 |u dkfz |
700 | 1 | _ | |a Stunnenberg, Hendrik G |b 26 |
700 | 1 | _ | |a Plass, Christoph |0 P:(DE-He78)4301875630bc997edf491c694ae1f8a9 |b 27 |u dkfz |
700 | 1 | _ | |a Rippe, Karsten |0 P:(DE-He78)94de5f7413279464b6e738d91dfae1eb |b 28 |u dkfz |
700 | 1 | _ | |a Mizuguchi, Junichiro |b 29 |
700 | 1 | _ | |a Herrmann, Carl |0 P:(DE-He78)be4a5aeed7282c071b3ff43e9685c48c |b 30 |u dkfz |
700 | 1 | _ | |a Eils, Roland |0 0000-0002-0034-4036 |b 31 |
700 | 1 | _ | |a Lehmann, Irina |b 32 |
773 | _ | _ | |g Vol. 12, no. 3 |0 PERI:(DE-600)2193510-5 |n 3 |p 861 |t Molecular systems biology |v 12 |y 2016 |x 1744-4292 |
909 | C | O | |o oai:inrepo02.dkfz.de:125485 |p VDB |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 0 |6 0000-0002-4961-3639 |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 2 |6 P:(DE-He78)4096eeffdfc73b75e8ba63dc621a017d |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 6 |6 P:(DE-He78)e247efc0264a7b0e4bae09804002d4e1 |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 7 |6 P:(DE-He78)73316f3cd41c27508dbb6f4c5e7e7a8a |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 8 |6 P:(DE-He78)ff4024f7bc236e7897d9c18ee19c451f |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 9 |6 P:(DE-He78)697cb039ca08f3b7e5a2a52dbf020b46 |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 13 |6 P:(DE-He78)aaef108f2a1ba0a78fff60ac60d3368c |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 18 |6 P:(DE-He78)61cb7750c5b9c56bb2bd5464780382cf |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 19 |6 P:(DE-He78)5398550c21bc4ce3b0ff670b04150334 |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 22 |6 P:(DE-He78)f2a782242acf94a3114d75c45dc75b37 |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 23 |6 P:(DE-He78)7ec2e98d8e1badc97076e799a99f5a38 |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 24 |6 P:(DE-He78)f6bebe05e7a748d3cbf9f59659567d52 |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 25 |6 P:(DE-He78)3f888debb126ff36634df058ccaaf2b4 |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 27 |6 P:(DE-He78)4301875630bc997edf491c694ae1f8a9 |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 28 |6 P:(DE-He78)94de5f7413279464b6e738d91dfae1eb |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 30 |6 P:(DE-He78)be4a5aeed7282c071b3ff43e9685c48c |
910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 31 |6 0000-0002-0034-4036 |
913 | 1 | _ | |a DE-HGF |l Krebsforschung |1 G:(DE-HGF)POF3-310 |0 G:(DE-HGF)POF3-312 |2 G:(DE-HGF)POF3-300 |v Functional and structural genomics |x 0 |4 G:(DE-HGF)POF |3 G:(DE-HGF)POF3 |b Gesundheit |
914 | 1 | _ | |y 2016 |
915 | _ | _ | |a JCR |0 StatID:(DE-HGF)0100 |2 StatID |b MOL SYST BIOL : 2015 |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0200 |2 StatID |b SCOPUS |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0300 |2 StatID |b Medline |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0310 |2 StatID |b NCBI Molecular Biology Database |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0501 |2 StatID |b DOAJ Seal |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0500 |2 StatID |b DOAJ |
915 | _ | _ | |a Creative Commons Attribution CC BY (No Version) |0 LIC:(DE-HGF)CCBYNV |2 V:(DE-HGF) |b DOAJ |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0600 |2 StatID |b Ebsco Academic Search |
915 | _ | _ | |a Peer Review |0 StatID:(DE-HGF)0030 |2 StatID |b ASC |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0199 |2 StatID |b Thomson Reuters Master Journal List |
915 | _ | _ | |a WoS |0 StatID:(DE-HGF)0110 |2 StatID |b Science Citation Index |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0150 |2 StatID |b Web of Science Core Collection |
915 | _ | _ | |a WoS |0 StatID:(DE-HGF)0111 |2 StatID |b Science Citation Index Expanded |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)1030 |2 StatID |b Current Contents - Life Sciences |
915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)1050 |2 StatID |b BIOSIS Previews |
915 | _ | _ | |a IF >= 10 |0 StatID:(DE-HGF)9910 |2 StatID |b MOL SYST BIOL : 2015 |
920 | 1 | _ | |0 I:(DE-He78)B080-20160331 |k B080 |l Theoretische Bioinformatik |x 0 |
920 | 1 | _ | |0 I:(DE-He78)C010-20160331 |k C010 |l Epigenomik und Krebsrisikofaktoren |x 1 |
920 | 1 | _ | |0 I:(DE-He78)W190-20160331 |k W190 |l Hochdurchsatz-Sequenzierung |x 2 |
920 | 1 | _ | |0 I:(DE-He78)W110-20160331 |k W110 |l Microarray Unit |x 3 |
920 | 1 | _ | |0 I:(DE-He78)B050-20160331 |k B050 |l Molekulare Genomanalyse |x 4 |
920 | 1 | _ | |0 I:(DE-He78)B066-20160331 |k B066 |l Genomorganisation und Funktion |x 5 |
980 | _ | _ | |a journal |
980 | _ | _ | |a VDB |
980 | _ | _ | |a I:(DE-He78)B080-20160331 |
980 | _ | _ | |a I:(DE-He78)C010-20160331 |
980 | _ | _ | |a I:(DE-He78)W190-20160331 |
980 | _ | _ | |a I:(DE-He78)W110-20160331 |
980 | _ | _ | |a I:(DE-He78)B050-20160331 |
980 | _ | _ | |a I:(DE-He78)B066-20160331 |
980 | _ | _ | |a UNRESTRICTED |
Library | Collection | CLSMajor | CLSMinor | Language | Author |
---|