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000142866 1001_ $$0P:(DE-He78)df8660bc5aba525f7fb6dba4aac15c1c$$aErkek, Serap$$b0$$eFirst author
000142866 245__ $$aComprehensive Analysis of Chromatin States in Atypical Teratoid/Rhabdoid Tumor Identifies Diverging Roles for SWI/SNF and Polycomb in Gene Regulation.
000142866 260__ $$aNew York, NY$$bElsevier$$c2019
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000142866 520__ $$aBiallelic inactivation of SMARCB1, encoding a member of the SWI/SNF chromatin remodeling complex, is the hallmark genetic aberration of atypical teratoid rhabdoid tumors (ATRT). Here, we report how loss of SMARCB1 affects the epigenome in these tumors. Using chromatin immunoprecipitation sequencing (ChIP-seq) on primary tumors for a series of active and repressive histone marks, we identified the chromatin states differentially represented in ATRTs compared with other brain tumors and non-neoplastic brain. Re-expression of SMARCB1 in ATRT cell lines enabled confirmation of our genome-wide findings for the chromatin states. Additional generation of ChIP-seq data for SWI/SNF and Polycomb group proteins and the transcriptional repressor protein REST determined differential dependencies of SWI/SNF and Polycomb complexes in regulation of diverse gene sets in ATRTs.
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000142866 7001_ $$0P:(DE-He78)3fdc3623477264cb5d0e14f256dbfbb8$$aJohann, Pascal$$b1$$eFirst author
000142866 7001_ $$aFinetti, Martina A$$b2
000142866 7001_ $$aDrosos, Yiannis$$b3
000142866 7001_ $$aChou, Hsien-Chao$$b4
000142866 7001_ $$0P:(DE-He78)1beba8f953e7ae7e96e8d3e9a48f10f7$$aZapatka, Marc$$b5
000142866 7001_ $$0P:(DE-He78)a46a5b2a871859c8e2d63d2f8c666807$$aSturm, Dominik$$b6
000142866 7001_ $$0P:(DE-He78)551bb92841f634070997aa168d818492$$aJones, David$$b7
000142866 7001_ $$0P:(DE-He78)8d9c904a6cea14d4c99c78ba46e41f93$$aKorshunov, Andrey$$b8
000142866 7001_ $$aRhyzova, Marina$$b9
000142866 7001_ $$0P:(DE-He78)1efb774993effe7a66a6ffc1b1cf9ccb$$aWolf, Stephan$$b10
000142866 7001_ $$0P:(DE-He78)697cb039ca08f3b7e5a2a52dbf020b46$$aMallm, Jan-Philipp$$b11
000142866 7001_ $$0P:(DE-He78)f6b238ac374345c55706521c4f435779$$aBeck, Katja$$b12
000142866 7001_ $$0P:(DE-He78)143af26de9d57bf624771616318aaf7c$$aWitt, Olaf$$b13
000142866 7001_ $$aKulozik, Andreas E$$b14
000142866 7001_ $$aFrühwald, Michael C$$b15
000142866 7001_ $$aNorthcott, Paul A$$b16
000142866 7001_ $$aKorbel, Jan O$$b17
000142866 7001_ $$0P:(DE-He78)e13b4363c5fe858044ef8a39c02c870c$$aLichter, Peter$$b18
000142866 7001_ $$0P:(DE-He78)78b6aa82148e60b4d91e3a37a6d3d9a0$$aEils, Roland$$b19
000142866 7001_ $$aGajjar, Amar$$b20
000142866 7001_ $$aRoberts, Charles W M$$b21
000142866 7001_ $$aWilliamson, Daniel$$b22
000142866 7001_ $$aHasselblatt, Martin$$b23
000142866 7001_ $$0P:(DE-He78)082dd3179733e3e716a58eb90f418a78$$aChavez, Lukas$$b24$$eLast author
000142866 7001_ $$0P:(DE-He78)f746aa965c4e1af518b016de3aaff5d9$$aPfister, Stefan$$b25$$eLast author
000142866 7001_ $$0P:(DE-He78)4c28e2aade5f44d8eca9dd8e97638ec8$$aKool, Marcel$$b26$$eLast author
000142866 773__ $$0PERI:(DE-600)2074034-7$$a10.1016/j.ccell.2018.11.014$$gVol. 35, no. 1, p. 95 - 110.e8$$n1$$p95 - 110.e8$$tCancer cell$$v35$$x1535-6108$$y2019
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