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@ARTICLE{Chun:147527,
      author       = {H. E. Chun and P. D. Johann$^*$ and K. Milne and M.
                      Zapatka$^*$ and A. Buellesbach$^*$ and N. Ishaque$^*$ and M.
                      Iskar$^*$ and S. Erkek and L. Wei and B. Tessier-Cloutier
                      and J. Lever and E. Titmuss and J. T. Topham and R. Bowlby
                      and E. Chuah and K. L. Mungall and Y. Ma and A. J. Mungall
                      and R. A. Moore and M. D. Taylor and D. S. Gerhard and S. J.
                      M. Jones and A. Korshunov$^*$ and M. Gessler and K. Kerl and
                      M. Hasselblatt and M. C. Frühwald and E. J. Perlman and B.
                      H. Nelson and S. M. Pfister$^*$ and M. A. Marra and M.
                      Kool$^*$},
      title        = {{I}dentification and {A}nalyses of {E}xtra-{C}ranial and
                      {C}ranial {R}habdoid {T}umor {M}olecular {S}ubgroups
                      {R}eveal {T}umors with {C}ytotoxic {T} {C}ell
                      {I}nfiltration.},
      journal      = {Cell reports},
      volume       = {29},
      number       = {8},
      issn         = {2211-1247},
      address      = {[New York, NY]},
      publisher    = {Elsevier},
      reportid     = {DKFZ-2019-02581},
      pages        = {2338-2354.e7},
      year         = {2019},
      note         = {29(8):2338-2354.e7},
      abstract     = {Extra-cranial malignant rhabdoid tumors (MRTs) and cranial
                      atypical teratoid RTs (ATRTs) are heterogeneous pediatric
                      cancers driven primarily by SMARCB1 loss. To understand the
                      genome-wide molecular relationships between MRTs and ATRTs,
                      we analyze multi-omics data from 140 MRTs and 161 ATRTs. We
                      detect similarities between the MYC subgroup of ATRTs
                      (ATRT-MYC) and extra-cranial MRTs, including global DNA
                      hypomethylation and overexpression of HOX genes and genes
                      involved in mesenchymal development, distinguishing them
                      from other ATRT subgroups that express neural-like features.
                      We identify five DNA methylation subgroups associated with
                      anatomical sites and SMARCB1 mutation patterns. Groups 1, 3,
                      and 4 exhibit cytotoxic T cell infiltration and expression
                      of immune checkpoint regulators, consistent with a potential
                      role for immunotherapy in rhabdoid tumor patients.},
      cin          = {B062 / B060 / B300 / L101},
      ddc          = {610},
      cid          = {I:(DE-He78)B062-20160331 / I:(DE-He78)B060-20160331 /
                      I:(DE-He78)B300-20160331 / I:(DE-He78)L101-20160331},
      pnm          = {312 - Functional and structural genomics (POF3-312)},
      pid          = {G:(DE-HGF)POF3-312},
      typ          = {PUB:(DE-HGF)16},
      pubmed       = {pmid:31708418},
      doi          = {10.1016/j.celrep.2019.10.013},
      url          = {https://inrepo02.dkfz.de/record/147527},
}