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Recent Publications

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http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Mrdjen, D. ; Cannon, B. J. ; Amouzgar, M. ; Kim, Y. ; Liu, C. ; Vijayaragavan, K. ; Camacho, C. ; Spence, A. ; McCaffrey, E. F. ; Bharadwaj, A. ; Tebaykin, D. ; Bukhari, S. ; Bosse, M. ; Hartmann, F.DKFZ* ; Kagel, A. ; Oliveria, J. P. ; Yakabi, K. ; Serrano, G. E. ; Corrada, M. M. ; Kawas, C. H. ; Tibshirani, R. ; Beach, T. G. ; Corces, M. R. ; Greenleaf, W. ; Angelo, R. M. ; Montine, T. ; Bendall, S. C.
Spatial proteomics of Alzheimer's disease-specific human microglial states.
Nature immunology 26(8), 1397-1410 (2025) [10.1038/s41590-025-02203-w]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Kalinin, A. A. ; Arevalo, J. ; Serrano, E. ; Vulliard, L.DKFZ* ; Tsang, H. ; Bornholdt, M. ; Muñoz, A. F. ; Sivagurunathan, S. ; Rajwa, B. ; Carpenter, A. E. ; Way, G. P. ; Singh, S.
A versatile information retrieval framework for evaluating profile strength and similarity.
Nature Communications 16(1), 5181 (2025) [10.1038/s41467-025-60306-2]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Tanevski, J. ; Vulliard, L.DKFZ* ; Ibarra-Arellano, M. A. ; Schapiro, D. ; Hartmann, F.DKFZ* ; Saez-Rodriguez, J.
Learning tissue representation by identification of persistent local patterns in spatial omics data.
Nature Communications 16(1), 4071 (2025) [10.1038/s41467-025-59448-0]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Kumar, R. ; Hartmann, F. J.DKFZ* ; Favaro, P. ; Ho, D. ; Bruce, T. ; Goldston, M. ; Spence, A. ; McCaffrey, E. F. ; Bendall, S. C. ; Angelo, M.
New Atomic Mass Tags for Enhanced Multiplexing Capability of Multiplexed Ion Beam Imaging Time-of-Flight (MIBI-TOF) Analysis.
Analytical chemistry 97(15), 8220-8230 (2025) [10.1021/acs.analchem.4c04300]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Valous, N. (First author)DKFZ* ; Hitzer, E. ; Duşe, D. ; Moraleda, R. R. ; Popp, F.DKFZ* ; Suarez-Carmona, M.DKFZ* ; Berthel, A.DKFZ* ; Papageorgiou, I. ; Fremd, C.DKFZ* ; Rölle, A.DKFZ* ; Westhoff, C. C. ; Lenoir, B.DKFZ* ; Halama, N.DKFZ* ; Zörnig, I.DKFZ* ; Jäger, D. (Last author)DKFZ*
Computational workflows for natural and biomedical image processing based on hypercomplex algebras
Patterns 6(11), 101388 (2025) [10.1016/j.patter.2025.101388]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Dissertation / PhD Thesis Truxa, S.DKFZ*
Spatial Mapping of Single Cell Metabolic States Across Human Tumors and Tumor Model Systems Using Multiplexed Ion Beam Imaging
Dissertation, University of Heidelberg, 2025     Fulltext BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article (Review Article) Hartmann, F. (Last author)DKFZ*
Spatial Immunometabolism: Integrating Technologies to Decode Cellular Metabolism in Tissues.
European journal of immunology 55(11), e70094 (2025) [10.1002/eji.70094]2025     Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Roberti, M. P. (First author)DKFZ* ; Charoentong, P.DKFZ* ; Lyu, Y. ; Meyer, M.DKFZ* ; Eichmüller, S.DKFZ* ; Schmidt, P.DKFZ* ; Momburg, F.DKFZ* ; Cetin, M.DKFZ* ; Hartmann, F.DKFZ* ; Valous, N.DKFZ* ; Stenzinger, A. ; Michel, L.DKFZ* ; Lichter, P.DKFZ* ; Schneeweiss, A.DKFZ* ; Thewes, V.DKFZ* ; Fremd, C.DKFZ* ; Zörnig, I.DKFZ* ; Jäger, D. (Last author)DKFZ*
Isolation of a tumor neoantigen specific CD8+ TCR from a skin biopsy of a vaccination site.
OncoImmunology 14(1), 2457793 (2025) [10.1080/2162402X.2025.2457793]2025     Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint Kalinin, A. A. ; Arevalo, J. ; Vulliard, L.DKFZ* ; Serrano, E. ; Tsang, H. ; Bornholdt, M. ; Rajwa, B. ; Carpenter, A. E. ; Way, G. P. ; Singh, S.
A versatile information retrieval framework for evaluating profile strength and similarity
[doi.org/10.1101/2024.04.01.587631]   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint Tanevski, J. ; Vulliard, L.DKFZ* ; Hartmann, F.DKFZ* ; Saez-Rodriguez, J.
Learning tissue representation by identification of persistent local patterns in spatial omics data
[doi.org/10.1101/2024.03.06.583691]   BibTeX | EndNote: XML, Text | RIS

All known publications ...
Download: BibTeX | EndNote XML,  Text | RIS |