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Recent Publications

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http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Mrdjen, D. ; Cannon, B. J. ; Amouzgar, M. ; Kim, Y. ; Liu, C. ; Vijayaragavan, K. ; Camacho, C. ; Spence, A. ; McCaffrey, E. F. ; Bharadwaj, A. ; Tebaykin, D. ; Bukhari, S. ; Bosse, M. ; Hartmann, F.DKFZ* ; Kagel, A. ; Oliveria, J. P. ; Yakabi, K. ; Serrano, G. E. ; Corrada, M. M. ; Kawas, C. H. ; Tibshirani, R. ; Beach, T. G. ; Corces, M. R. ; Greenleaf, W. ; Angelo, R. M. ; Montine, T. ; Bendall, S. C.
Spatial proteomics of Alzheimer's disease-specific human microglial states.
Nature immunology 26(8), 1397-1410 (2025) [10.1038/s41590-025-02203-w]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Kalinin, A. A. ; Arevalo, J. ; Serrano, E. ; Vulliard, L.DKFZ* ; Tsang, H. ; Bornholdt, M. ; Muñoz, A. F. ; Sivagurunathan, S. ; Rajwa, B. ; Carpenter, A. E. ; Way, G. P. ; Singh, S.
A versatile information retrieval framework for evaluating profile strength and similarity.
Nature Communications 16(1), 5181 (2025) [10.1038/s41467-025-60306-2]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Tanevski, J. ; Vulliard, L.DKFZ* ; Ibarra-Arellano, M. A. ; Schapiro, D. ; Hartmann, F.DKFZ* ; Saez-Rodriguez, J.
Learning tissue representation by identification of persistent local patterns in spatial omics data.
Nature Communications 16(1), 4071 (2025) [10.1038/s41467-025-59448-0]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Kumar, R. ; Hartmann, F. J.DKFZ* ; Favaro, P. ; Ho, D. ; Bruce, T. ; Goldston, M. ; Spence, A. ; McCaffrey, E. F. ; Bendall, S. C. ; Angelo, M.
New Atomic Mass Tags for Enhanced Multiplexing Capability of Multiplexed Ion Beam Imaging Time-of-Flight (MIBI-TOF) Analysis.
Analytical chemistry 97(15), 8220-8230 (2025) [10.1021/acs.analchem.4c04300]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Roberti, M. P. (First author)DKFZ* ; Charoentong, P.DKFZ* ; Lyu, Y. ; Meyer, M.DKFZ* ; Eichmüller, S.DKFZ* ; Schmidt, P.DKFZ* ; Momburg, F.DKFZ* ; Cetin, M.DKFZ* ; Hartmann, F.DKFZ* ; Valous, N.DKFZ* ; Stenzinger, A. ; Michel, L.DKFZ* ; Lichter, P.DKFZ* ; Schneeweiss, A.DKFZ* ; Thewes, V.DKFZ* ; Fremd, C.DKFZ* ; Zörnig, I.DKFZ* ; Jäger, D. (Last author)DKFZ*
Isolation of a tumor neoantigen specific CD8+ TCR from a skin biopsy of a vaccination site.
OncoImmunology 14(1), 2457793 (2025) [10.1080/2162402X.2025.2457793]2025     Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint Kalinin, A. A. ; Arevalo, J. ; Vulliard, L.DKFZ* ; Serrano, E. ; Tsang, H. ; Bornholdt, M. ; Rajwa, B. ; Carpenter, A. E. ; Way, G. P. ; Singh, S.
A versatile information retrieval framework for evaluating profile strength and similarity
[doi.org/10.1101/2024.04.01.587631]   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint Tanevski, J. ; Vulliard, L.DKFZ* ; Hartmann, F.DKFZ* ; Saez-Rodriguez, J.
Learning tissue representation by identification of persistent local patterns in spatial omics data
[doi.org/10.1101/2024.03.06.583691]   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Hakobyan, A. ; Meyenberg, M. ; Vardazaryan, N. ; Hancock, J. ; Vulliard, L.DKFZ* ; Loizou, J. I. ; Menche, J.
Pan-cancer analysis of the interplay between mutational signatures and cellular signaling
iScience 27(6), 109873 (2024) [10.1016/j.isci.2024.109873]2024   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Contribution to a book Glauner, T. A.DKFZ* ; Truxa, S.DKFZ* ; Cetin, M.DKFZ* ; Schlüter, K.DKFZ* ; Calafato, D.DKFZ* ; Hartmann, F. J.DKFZ*
Spatial quantification of cellular metabolism in tissues by metabolic regulome profiling
2024Revealing Unchartered Biology with Single Intact Cells / Glauner, Teresa A. ; : Elsevier, 2024, ; ISBN: 9780128222133 ; doi:10.1016/B978-0-12-822213-3.00006-1 - : Elsevier 71 - 98 (2024) [10.1016/B978-0-12-822213-3.00006-1]2024   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Cosgrove, J. ; Marçais, A. ; Hartmann, F.DKFZ* ; Bergthaler, A. ; Zanoni, I. ; Corrado, M. ; Perié, L. ; Cabezas-Wallscheid, N. ; Bousso, P. ; Alexandrov, T. ; Kielian, T. ; Martínez-Martín, N. ; Opitz, C. A.DKFZ* ; Lyssiotis, C. A. ; Argüello, R. J. ; Van den Bossche, J.
A call for accessible tools to unlock single-cell immunometabolism research.
Nature metabolism 6(5), 779-782 (2024) [10.1038/s42255-024-01031-w]2024     Files BibTeX | EndNote: XML, Text | RIS

All known publications ...
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