000170558 001__ 170558 000170558 005__ 20240229133717.0 000170558 0247_ $$2doi$$a10.1038/s41586-021-03891-8 000170558 0247_ $$2pmid$$apmid:34497420 000170558 0247_ $$2ISSN$$a0028-0836 000170558 0247_ $$2ISSN$$a1476-4687 000170558 0247_ $$2altmetric$$aaltmetric:113085384 000170558 037__ $$aDKFZ-2021-02009 000170558 041__ $$aEnglish 000170558 082__ $$a500 000170558 1001_ $$00000-0002-1602-5371$$aKlünemann, Martina$$b0 000170558 245__ $$aBioaccumulation of therapeutic drugs by human gut bacteria. 000170558 260__ $$aLondon [u.a.]$$bNature Publ. Group$$c2021 000170558 3367_ $$2DRIVER$$aarticle 000170558 3367_ $$2DataCite$$aOutput Types/Journal article 000170558 3367_ $$0PUB:(DE-HGF)16$$2PUB:(DE-HGF)$$aJournal Article$$bjournal$$mjournal$$s1642424827_22337 000170558 3367_ $$2BibTeX$$aARTICLE 000170558 3367_ $$2ORCID$$aJOURNAL_ARTICLE 000170558 3367_ $$00$$2EndNote$$aJournal Article 000170558 500__ $$a#EA:B400# /2021 Sep;597(7877):533-538 000170558 520__ $$aBacteria in the gut can modulate the availability and efficacy of therapeutic drugs. However, the systematic mapping of the interactions between drugs and bacteria has only started recently1 and the main underlying mechanism proposed is the chemical transformation of drugs by microorganisms (biotransformation). Here we investigated the depletion of 15 structurally diverse drugs by 25 representative strains of gut bacteria. This revealed 70 bacteria-drug interactions, 29 of which had not to our knowledge been reported before. Over half of the new interactions can be ascribed to bioaccumulation; that is, bacteria storing the drug intracellularly without chemically modifying it, and in most cases without the growth of the bacteria being affected. As a case in point, we studied the molecular basis of bioaccumulation of the widely used antidepressant duloxetine by using click chemistry, thermal proteome profiling and metabolomics. We find that duloxetine binds to several metabolic enzymes and changes the metabolite secretion of the respective bacteria. When tested in a defined microbial community of accumulators and non-accumulators, duloxetine markedly altered the composition of the community through metabolic cross-feeding. We further validated our findings in an animal model, showing that bioaccumulating bacteria attenuate the behavioural response of Caenorhabditis elegans to duloxetine. Together, our results show that bioaccumulation by gut bacteria may be a common mechanism that alters drug availability and bacterial metabolism, with implications for microbiota composition, pharmacokinetics, side effects and drug responses, probably in an individual manner. 000170558 536__ $$0G:(DE-HGF)POF4-312$$a312 - Funktionelle und strukturelle Genomforschung (POF4-312)$$cPOF4-312$$fPOF IV$$x0 000170558 588__ $$aDataset connected to CrossRef, PubMed, , Journals: inrepo01.inet.dkfz-heidelberg.de 000170558 7001_ $$0P:(DE-He78)0f0276d7e9af07e98339a060db121ab2$$aAndrejev, Sergej$$b1$$eFirst author$$udkfz 000170558 7001_ $$aBlasche, Sonja$$b2 000170558 7001_ $$00000-0001-6870-0677$$aMateus, Andre$$b3 000170558 7001_ $$00000-0002-9487-597X$$aPhapale, Prasad$$b4 000170558 7001_ $$aDevendran, Saravanan$$b5 000170558 7001_ $$aVappiani, Johanna$$b6 000170558 7001_ $$aSimon, Bernd$$b7 000170558 7001_ $$aScott, Timothy A$$b8 000170558 7001_ $$00000-0001-9550-4487$$aKafkia, Eleni$$b9 000170558 7001_ $$aKonstantinidis, Dimitrios$$b10 000170558 7001_ $$aZirngibl, Katharina$$b11 000170558 7001_ $$00000-0003-2127-4150$$aMastrorilli, Eleonora$$b12 000170558 7001_ $$aBanzhaf, Manuel$$b13 000170558 7001_ $$00000-0003-2928-1144$$aMackmull, Marie-Therese$$b14 000170558 7001_ $$aHövelmann, Felix$$b15 000170558 7001_ $$aNesme, Leo$$b16 000170558 7001_ $$aBrochado, Ana Rita$$b17 000170558 7001_ $$00000-0002-6473-4762$$aMaier, Lisa$$b18 000170558 7001_ $$00000-0002-9314-5318$$aBock, Thomas$$b19 000170558 7001_ $$aPeriwal, Vinita$$b20 000170558 7001_ $$aKumar, Manjeet$$b21 000170558 7001_ $$00000-0002-3336-6741$$aKim, Yongkyu$$b22 000170558 7001_ $$aTramontano, Melanie$$b23 000170558 7001_ $$aSchultz, Carsten$$b24 000170558 7001_ $$00000-0002-7397-1321$$aBeck, Martin$$b25 000170558 7001_ $$00000-0001-5214-7002$$aHennig, Janosch$$b26 000170558 7001_ $$00000-0002-5797-3589$$aZimmermann, Michael$$b27 000170558 7001_ $$aSévin, Daniel C$$b28 000170558 7001_ $$00000-0002-3696-4843$$aCabreiro, Filipe$$b29 000170558 7001_ $$00000-0003-2011-9247$$aSavitski, Mikhail M$$b30 000170558 7001_ $$00000-0002-2627-833X$$aBork, Peer$$b31 000170558 7001_ $$00000-0002-0797-9018$$aTypas, Athanasios$$b32 000170558 7001_ $$00000-0002-6166-8640$$aPatil, Kiran R$$b33 000170558 773__ $$0PERI:(DE-600)1413423-8$$a10.1038/s41586-021-03891-8$$n7877$$p533-538$$tNature <London>$$v597$$x1476-4687$$y2021 000170558 909CO $$ooai:inrepo02.dkfz.de:170558$$pVDB 000170558 9101_ $$0I:(DE-588b)2036810-0$$6P:(DE-He78)0f0276d7e9af07e98339a060db121ab2$$aDeutsches Krebsforschungszentrum$$b1$$kDKFZ 000170558 9131_ $$0G:(DE-HGF)POF4-312$$1G:(DE-HGF)POF4-310$$2G:(DE-HGF)POF4-300$$3G:(DE-HGF)POF4$$4G:(DE-HGF)POF$$aDE-HGF$$bGesundheit$$lKrebsforschung$$vFunktionelle und strukturelle Genomforschung$$x0 000170558 9141_ $$y2021 000170558 915__ $$0StatID:(DE-HGF)0420$$2StatID$$aNationallizenz$$d2021-01-27$$wger 000170558 915__ $$0StatID:(DE-HGF)0100$$2StatID$$aJCR$$bNATURE : 2019$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)0200$$2StatID$$aDBCoverage$$bSCOPUS$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)0300$$2StatID$$aDBCoverage$$bMedline$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)0600$$2StatID$$aDBCoverage$$bEbsco Academic Search$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)0030$$2StatID$$aPeer Review$$bASC$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)0199$$2StatID$$aDBCoverage$$bClarivate Analytics Master Journal List$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)1030$$2StatID$$aDBCoverage$$bCurrent Contents - Life Sciences$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)1200$$2StatID$$aDBCoverage$$bChemical Reactions$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)0160$$2StatID$$aDBCoverage$$bEssential Science Indicators$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)1050$$2StatID$$aDBCoverage$$bBIOSIS Previews$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)1150$$2StatID$$aDBCoverage$$bCurrent Contents - Physical, Chemical and Earth Sciences$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)1210$$2StatID$$aDBCoverage$$bIndex Chemicus$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)1060$$2StatID$$aDBCoverage$$bCurrent Contents - Agriculture, Biology and Environmental Sciences$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)1040$$2StatID$$aDBCoverage$$bZoological Record$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)1190$$2StatID$$aDBCoverage$$bBiological Abstracts$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)0113$$2StatID$$aWoS$$bScience Citation Index Expanded$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)0150$$2StatID$$aDBCoverage$$bWeb of Science Core Collection$$d2021-01-27 000170558 915__ $$0StatID:(DE-HGF)9940$$2StatID$$aIF >= 40$$bNATURE : 2019$$d2021-01-27 000170558 9201_ $$0I:(DE-He78)B400-20160331$$kB400$$lHirngenom-Mosaizismus und Tumorgenese$$x0 000170558 980__ $$ajournal 000170558 980__ $$aVDB 000170558 980__ $$aI:(DE-He78)B400-20160331 000170558 980__ $$aUNRESTRICTED