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@ARTICLE{Mate:181416,
      author       = {S. Mate and P. D. Vormstein$^*$ and D. Kadioglu and R. W.
                      Majeed and M. Lablans$^*$ and H.-U. Prokosch and H.
                      Storf$^*$},
      title        = {{O}n-{T}he-{F}ly {Q}uery {T}ranslation {B}etween i2b2 and
                      {S}amply in the {G}erman {B}iobank {N}ode ({GBN})
                      {P}rototypes.},
      journal      = {Studies in health technology and informatics},
      volume       = {243},
      issn         = {0926-9630},
      address      = {Amsterdam},
      publisher    = {IOS Press},
      reportid     = {DKFZ-2022-01984},
      pages        = {42-46},
      year         = {2017},
      note         = {POF Topic: 317},
      abstract     = {Information retrieval is a major challenge in medical
                      informatics. Various research projects have worked on this
                      task in recent years on an institutional level by developing
                      tools to integrate and retrieve information. However, when
                      it comes down to querying such data across institutions, the
                      challenge persists due to the high heterogeneity of data and
                      differences in software systems. The German Biobank Node
                      (GBN) project faced this challenge when trying to
                      interconnect four biobanks to enable distributed queries for
                      biospecimens. All biobanks had already established
                      integrated data repositories, and some of them were already
                      part of research networks. Instead of developing another
                      software platform, GBN decided to form a bridge between
                      these. This paper describes and discusses a core component
                      from the GBN project, the OmniQuery library, which was
                      implemented to enable on-the-fly query translation between
                      heterogeneous research infrastructures.},
      keywords     = {Biological Specimen Banks / Information Storage and
                      Retrieval / Software / Data harmonization (Other) /
                      biobanking (Other) / federated search (Other) /
                      interoperability (Other)},
      cin          = {L501 / G230},
      ddc          = {300},
      cid          = {I:(DE-He78)L501-20160331 / I:(DE-He78)G230-20160331},
      pnm          = {317 - Translational cancer research (POF3-317)},
      pid          = {G:(DE-HGF)POF3-317},
      typ          = {PUB:(DE-HGF)16},
      pubmed       = {pmid:28883167},
      url          = {https://inrepo02.dkfz.de/record/181416},
}