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| Home > Publications database > On-The-Fly Query Translation Between i2b2 and Samply in the German Biobank Node (GBN) Prototypes. > print |
| Home > Publications database > On-The-Fly Query Translation Between i2b2 and Samply in the German Biobank Node (GBN) Prototypes. > print |
| 001 | 181416 | ||
| 005 | 20240301130857.0 | ||
| 024 | 7 | _ | |a pmid:28883167 |2 pmid |
| 024 | 7 | _ | |a 0926-9630 |2 ISSN |
| 024 | 7 | _ | |a 1879-8365 |2 ISSN |
| 037 | _ | _ | |a DKFZ-2022-01984 |
| 041 | _ | _ | |a English |
| 082 | _ | _ | |a 300 |
| 100 | 1 | _ | |a Mate, Sebastian |b 0 |
| 245 | _ | _ | |a On-The-Fly Query Translation Between i2b2 and Samply in the German Biobank Node (GBN) Prototypes. |
| 260 | _ | _ | |a Amsterdam |c 2017 |b IOS Press |
| 336 | 7 | _ | |a article |2 DRIVER |
| 336 | 7 | _ | |a Output Types/Journal article |2 DataCite |
| 336 | 7 | _ | |a Journal Article |b journal |m journal |0 PUB:(DE-HGF)16 |s 1661326994_31348 |2 PUB:(DE-HGF) |
| 336 | 7 | _ | |a ARTICLE |2 BibTeX |
| 336 | 7 | _ | |a JOURNAL_ARTICLE |2 ORCID |
| 336 | 7 | _ | |a Journal Article |0 0 |2 EndNote |
| 500 | _ | _ | |a POF Topic: 317 |
| 520 | _ | _ | |a Information retrieval is a major challenge in medical informatics. Various research projects have worked on this task in recent years on an institutional level by developing tools to integrate and retrieve information. However, when it comes down to querying such data across institutions, the challenge persists due to the high heterogeneity of data and differences in software systems. The German Biobank Node (GBN) project faced this challenge when trying to interconnect four biobanks to enable distributed queries for biospecimens. All biobanks had already established integrated data repositories, and some of them were already part of research networks. Instead of developing another software platform, GBN decided to form a bridge between these. This paper describes and discusses a core component from the GBN project, the OmniQuery library, which was implemented to enable on-the-fly query translation between heterogeneous research infrastructures. |
| 536 | _ | _ | |a 317 - Translational cancer research (POF3-317) |0 G:(DE-HGF)POF3-317 |c POF3-317 |f POF III |x 0 |
| 588 | _ | _ | |a Dataset connected to PubMed, , Journals: inrepo02.dkfz.de |
| 650 | _ | 7 | |a Data harmonization |2 Other |
| 650 | _ | 7 | |a biobanking |2 Other |
| 650 | _ | 7 | |a federated search |2 Other |
| 650 | _ | 7 | |a interoperability |2 Other |
| 650 | _ | 2 | |a Biological Specimen Banks |2 MeSH |
| 650 | _ | 2 | |a Information Storage and Retrieval |2 MeSH |
| 650 | _ | 2 | |a Software |2 MeSH |
| 700 | 1 | _ | |a Vormstein, Patric Daniel |0 P:(DE-He78)44b380dff67aa91ef0c1d8dac5868fd1 |b 1 |
| 700 | 1 | _ | |a Kadioglu, Dennis |b 2 |
| 700 | 1 | _ | |a Majeed, Raphael W |b 3 |
| 700 | 1 | _ | |a Lablans, Martin |0 P:(DE-He78)e4ad7b4e684492de43cfcb12e5397439 |b 4 |u dkfz |
| 700 | 1 | _ | |a Prokosch, Hans-Ulrich |b 5 |
| 700 | 1 | _ | |a Storf, Holger |0 P:(DE-He78)dea327b39644826b7484600922cf0e50 |b 6 |
| 773 | _ | _ | |g Vol. 243 |0 PERI:(DE-600)1088535-3 |p 42-46 |t Studies in health technology and informatics |v 243 |y 2017 |x 0926-9630 |
| 909 | C | O | |o oai:inrepo02.dkfz.de:181416 |p VDB |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 1 |6 P:(DE-He78)44b380dff67aa91ef0c1d8dac5868fd1 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 4 |6 P:(DE-He78)e4ad7b4e684492de43cfcb12e5397439 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 6 |6 P:(DE-He78)dea327b39644826b7484600922cf0e50 |
| 913 | 1 | _ | |a DE-HGF |b Gesundheit |l Krebsforschung |1 G:(DE-HGF)POF3-310 |0 G:(DE-HGF)POF3-317 |3 G:(DE-HGF)POF3 |2 G:(DE-HGF)POF3-300 |4 G:(DE-HGF)POF |v Translational cancer research |x 0 |
| 914 | 1 | _ | |y 2017 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0200 |2 StatID |b SCOPUS |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0300 |2 StatID |b Medline |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0310 |2 StatID |b NCBI Molecular Biology Database |
| 920 | 1 | _ | |0 I:(DE-He78)L501-20160331 |k L501 |l DKTK Frankfurt |x 0 |
| 920 | 1 | _ | |0 I:(DE-He78)G230-20160331 |k G230 |l Medizinische Informatik in der Translationalen Onkologie |x 1 |
| 980 | _ | _ | |a journal |
| 980 | _ | _ | |a VDB |
| 980 | _ | _ | |a I:(DE-He78)L501-20160331 |
| 980 | _ | _ | |a I:(DE-He78)G230-20160331 |
| 980 | _ | _ | |a UNRESTRICTED |
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