guest ::
| Home > Publications database > Metrics reloaded: recommendations for image analysis validation. > print |
| Home > Publications database > Metrics reloaded: recommendations for image analysis validation. > print |
| 001 | 288083 | ||
| 005 | 20250326103243.0 | ||
| 024 | 7 | _ | |a 10.1038/s41592-023-02151-z |2 doi |
| 024 | 7 | _ | |a pmid:38347141 |2 pmid |
| 024 | 7 | _ | |a 1548-7091 |2 ISSN |
| 024 | 7 | _ | |a 1548-7105 |2 ISSN |
| 024 | 7 | _ | |a altmetric:159461769 |2 altmetric |
| 037 | _ | _ | |a DKFZ-2024-00337 |
| 041 | _ | _ | |a English |
| 082 | _ | _ | |a 610 |
| 100 | 1 | _ | |a Maier-Hein, Lena |0 P:(DE-He78)26a1176cd8450660333a012075050072 |b 0 |e First author |
| 245 | _ | _ | |a Metrics reloaded: recommendations for image analysis validation. |
| 260 | _ | _ | |a London [u.a.] |c 2024 |b Nature Publishing Group |
| 336 | 7 | _ | |a article |2 DRIVER |
| 336 | 7 | _ | |a Output Types/Journal article |2 DataCite |
| 336 | 7 | _ | |a Journal Article |b journal |m journal |0 PUB:(DE-HGF)16 |s 1710237197_32557 |2 PUB:(DE-HGF) |x Review Article |
| 336 | 7 | _ | |a ARTICLE |2 BibTeX |
| 336 | 7 | _ | |a JOURNAL_ARTICLE |2 ORCID |
| 336 | 7 | _ | |a Journal Article |0 0 |2 EndNote |
| 500 | _ | _ | |a #EA:E130#LA:E290# |
| 520 | _ | _ | |a Increasing evidence shows that flaws in machine learning (ML) algorithm validation are an underestimated global problem. In biomedical image analysis, chosen performance metrics often do not reflect the domain interest, and thus fail to adequately measure scientific progress and hinder translation of ML techniques into practice. To overcome this, we created Metrics Reloaded, a comprehensive framework guiding researchers in the problem-aware selection of metrics. Developed by a large international consortium in a multistage Delphi process, it is based on the novel concept of a problem fingerprint-a structured representation of the given problem that captures all aspects that are relevant for metric selection, from the domain interest to the properties of the target structure(s), dataset and algorithm output. On the basis of the problem fingerprint, users are guided through the process of choosing and applying appropriate validation metrics while being made aware of potential pitfalls. Metrics Reloaded targets image analysis problems that can be interpreted as classification tasks at image, object or pixel level, namely image-level classification, object detection, semantic segmentation and instance segmentation tasks. To improve the user experience, we implemented the framework in the Metrics Reloaded online tool. Following the convergence of ML methodology across application domains, Metrics Reloaded fosters the convergence of validation methodology. Its applicability is demonstrated for various biomedical use cases. |
| 536 | _ | _ | |a 315 - Bildgebung und Radioonkologie (POF4-315) |0 G:(DE-HGF)POF4-315 |c POF4-315 |f POF IV |x 0 |
| 588 | _ | _ | |a Dataset connected to CrossRef, PubMed, , Journals: inrepo02.dkfz.de |
| 700 | 1 | _ | |a Reinke, Annika |0 P:(DE-He78)97e904f47dab556a77c0149cd0002591 |b 1 |e First author |
| 700 | 1 | _ | |a Godau, Patrick |0 P:(DE-He78)77a2a5b07dcbd46277a18a32372ea154 |b 2 |
| 700 | 1 | _ | |a Tizabi, Minu D |0 P:(DE-He78)26651d9aa10255ad4f35610a56aa91e8 |b 3 |
| 700 | 1 | _ | |a Büttner, Florian |0 P:(DE-He78)fdeeec93551e8f3bad68db88a1130c5d |b 4 |u dkfz |
| 700 | 1 | _ | |a Christodoulou, Evangelia |0 P:(DE-He78)8da2eca0bc6341c8681c317fe2b8e27b |b 5 |
| 700 | 1 | _ | |a Glocker, Ben |0 0000-0002-4897-9356 |b 6 |
| 700 | 1 | _ | |a Isensee, Fabian |0 P:(DE-He78)7ea9af59d03ec7deb982a0e0562358fa |b 7 |
| 700 | 1 | _ | |a Kleesiek, Jens |b 8 |
| 700 | 1 | _ | |a Kozubek, Michal |0 0000-0001-7902-589X |b 9 |
| 700 | 1 | _ | |a Reyes, Mauricio |b 10 |
| 700 | 1 | _ | |a Riegler, Michael A |0 0000-0002-3153-2064 |b 11 |
| 700 | 1 | _ | |a Wiesenfarth, Manuel |0 P:(DE-He78)1042737c83ba70ec508bdd99f0096864 |b 12 |
| 700 | 1 | _ | |a Kavur, A Emre |0 P:(DE-He78)64296d0922a2da68074f5de2ccf74487 |b 13 |
| 700 | 1 | _ | |a Sudre, Carole H |b 14 |
| 700 | 1 | _ | |a Baumgartner, Michael |0 P:(DE-He78)6ae68adec0915a4ae2d58aff814aaceb |b 15 |
| 700 | 1 | _ | |a Eisenmann, Matthias |0 P:(DE-He78)c9d6245b17f0ab26eeed345cb00d3359 |b 16 |
| 700 | 1 | _ | |a Heckmann-Nötzel, Doreen |0 P:(DE-He78)98dd16a42af0888dd129e1cd2ee2766a |b 17 |
| 700 | 1 | _ | |a Rädsch, Tim |0 P:(DE-He78)683f71d452c83a7f5ec62969c6012466 |b 18 |
| 700 | 1 | _ | |a Acion, Laura |0 0000-0001-5213-6012 |b 19 |
| 700 | 1 | _ | |a Antonelli, Michela |0 0000-0002-3005-4523 |b 20 |
| 700 | 1 | _ | |a Arbel, Tal |0 0000-0001-8870-3007 |b 21 |
| 700 | 1 | _ | |a Bakas, Spyridon |0 0000-0001-8734-6482 |b 22 |
| 700 | 1 | _ | |a Benis, Arriel |0 0000-0002-9125-8300 |b 23 |
| 700 | 1 | _ | |a Blaschko, Matthew B |b 24 |
| 700 | 1 | _ | |a Cardoso, M Jorge |0 0000-0003-1284-2558 |b 25 |
| 700 | 1 | _ | |a Cheplygina, Veronika |b 26 |
| 700 | 1 | _ | |a Cimini, Beth A |0 0000-0001-9640-9318 |b 27 |
| 700 | 1 | _ | |a Collins, Gary S |0 0000-0002-2772-2316 |b 28 |
| 700 | 1 | _ | |a Farahani, Keyvan |b 29 |
| 700 | 1 | _ | |a Ferrer, Luciana |b 30 |
| 700 | 1 | _ | |a Galdran, Adrian |b 31 |
| 700 | 1 | _ | |a van Ginneken, Bram |b 32 |
| 700 | 1 | _ | |a Haase, Robert |b 33 |
| 700 | 1 | _ | |a Hashimoto, Daniel A |0 0000-0003-4725-3104 |b 34 |
| 700 | 1 | _ | |a Hoffman, Michael M |0 0000-0002-4517-1562 |b 35 |
| 700 | 1 | _ | |a Huisman, Merel |b 36 |
| 700 | 1 | _ | |a Jannin, Pierre |0 0000-0002-7415-071X |b 37 |
| 700 | 1 | _ | |a Kahn, Charles E |0 0000-0002-6654-7434 |b 38 |
| 700 | 1 | _ | |a Kainmueller, Dagmar |b 39 |
| 700 | 1 | _ | |a Kainz, Bernhard |b 40 |
| 700 | 1 | _ | |a Karargyris, Alexandros |0 0000-0002-1930-3410 |b 41 |
| 700 | 1 | _ | |a Karthikesalingam, Alan |b 42 |
| 700 | 1 | _ | |a Kofler, Florian |b 43 |
| 700 | 1 | _ | |a Kopp-Schneider, Annette |0 P:(DE-He78)bb6a7a70f976eb8df1769944bf913596 |b 44 |
| 700 | 1 | _ | |a Kreshuk, Anna |0 0000-0003-1334-6388 |b 45 |
| 700 | 1 | _ | |a Kurc, Tahsin |b 46 |
| 700 | 1 | _ | |a Landman, Bennett A |0 0000-0001-5733-2127 |b 47 |
| 700 | 1 | _ | |a Litjens, Geert |0 0000-0003-1554-1291 |b 48 |
| 700 | 1 | _ | |a Madani, Amin |b 49 |
| 700 | 1 | _ | |a Maier-Hein, Klaus |0 P:(DE-He78)33c74005e1ce56f7025c4f6be15321b3 |b 50 |
| 700 | 1 | _ | |a Martel, Anne L |0 0000-0003-1375-5501 |b 51 |
| 700 | 1 | _ | |a Mattson, Peter |0 0000-0002-5984-238X |b 52 |
| 700 | 1 | _ | |a Meijering, Erik |0 0000-0001-8015-8358 |b 53 |
| 700 | 1 | _ | |a Menze, Bjoern |0 0000-0003-4136-5690 |b 54 |
| 700 | 1 | _ | |a Moons, Karel G M |b 55 |
| 700 | 1 | _ | |a Müller, Henning |0 0000-0001-6800-9878 |b 56 |
| 700 | 1 | _ | |a Nichyporuk, Brennan |0 0009-0006-8087-6089 |b 57 |
| 700 | 1 | _ | |a Nickel, Felix |b 58 |
| 700 | 1 | _ | |a Petersen, Jens |b 59 |
| 700 | 1 | _ | |a Rajpoot, Nasir |0 0000-0001-6760-1271 |b 60 |
| 700 | 1 | _ | |a Rieke, Nicola |0 0000-0003-0241-9334 |b 61 |
| 700 | 1 | _ | |a Saez-Rodriguez, Julio |b 62 |
| 700 | 1 | _ | |a Sánchez, Clara I |b 63 |
| 700 | 1 | _ | |a Shetty, Shravya |b 64 |
| 700 | 1 | _ | |a van Smeden, Maarten |b 65 |
| 700 | 1 | _ | |a Summers, Ronald M |0 0000-0001-8081-7376 |b 66 |
| 700 | 1 | _ | |a Taha, Abdel A |0 0000-0002-7604-9041 |b 67 |
| 700 | 1 | _ | |a Tiulpin, Aleksei |0 0000-0002-7852-4141 |b 68 |
| 700 | 1 | _ | |a Tsaftaris, Sotirios A |b 69 |
| 700 | 1 | _ | |a Van Calster, Ben |b 70 |
| 700 | 1 | _ | |a Varoquaux, Gaël |0 0000-0003-1076-5122 |b 71 |
| 700 | 1 | _ | |a Jäger, Paul |0 P:(DE-He78)04a0b5a49db132d8f00cee326cb743ca |b 72 |e Last author |
| 773 | _ | _ | |a 10.1038/s41592-023-02151-z |g Vol. 21, no. 2, p. 195 - 212 |0 PERI:(DE-600)2163081-1 |n 2 |p 195 - 212 |t Nature methods |v 21 |y 2024 |x 1548-7091 |
| 856 | 4 | _ | |u https://inrepo02.dkfz.de/record/288083/files/s41592-023-02151-z.pdf |
| 856 | 4 | _ | |u https://inrepo02.dkfz.de/record/288083/files/s41592-023-02151-z.pdf?subformat=pdfa |x pdfa |
| 909 | C | O | |p VDB |o oai:inrepo02.dkfz.de:288083 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 0 |6 P:(DE-He78)26a1176cd8450660333a012075050072 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 1 |6 P:(DE-He78)97e904f47dab556a77c0149cd0002591 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 2 |6 P:(DE-He78)77a2a5b07dcbd46277a18a32372ea154 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 3 |6 P:(DE-He78)26651d9aa10255ad4f35610a56aa91e8 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 4 |6 P:(DE-He78)fdeeec93551e8f3bad68db88a1130c5d |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 5 |6 P:(DE-He78)8da2eca0bc6341c8681c317fe2b8e27b |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 7 |6 P:(DE-He78)7ea9af59d03ec7deb982a0e0562358fa |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 12 |6 P:(DE-He78)1042737c83ba70ec508bdd99f0096864 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 13 |6 P:(DE-He78)64296d0922a2da68074f5de2ccf74487 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 15 |6 P:(DE-He78)6ae68adec0915a4ae2d58aff814aaceb |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 16 |6 P:(DE-He78)c9d6245b17f0ab26eeed345cb00d3359 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 17 |6 P:(DE-He78)98dd16a42af0888dd129e1cd2ee2766a |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 18 |6 P:(DE-He78)683f71d452c83a7f5ec62969c6012466 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 44 |6 P:(DE-He78)bb6a7a70f976eb8df1769944bf913596 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 50 |6 P:(DE-He78)33c74005e1ce56f7025c4f6be15321b3 |
| 910 | 1 | _ | |a Deutsches Krebsforschungszentrum |0 I:(DE-588b)2036810-0 |k DKFZ |b 72 |6 P:(DE-He78)04a0b5a49db132d8f00cee326cb743ca |
| 913 | 1 | _ | |a DE-HGF |b Gesundheit |l Krebsforschung |1 G:(DE-HGF)POF4-310 |0 G:(DE-HGF)POF4-315 |3 G:(DE-HGF)POF4 |2 G:(DE-HGF)POF4-300 |4 G:(DE-HGF)POF |v Bildgebung und Radioonkologie |x 0 |
| 914 | 1 | _ | |y 2024 |
| 915 | _ | _ | |a Nationallizenz |0 StatID:(DE-HGF)0420 |2 StatID |d 2023-08-29 |w ger |
| 915 | _ | _ | |a DEAL Nature |0 StatID:(DE-HGF)3003 |2 StatID |d 2023-08-29 |w ger |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0200 |2 StatID |b SCOPUS |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0300 |2 StatID |b Medline |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0199 |2 StatID |b Clarivate Analytics Master Journal List |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)1050 |2 StatID |b BIOSIS Previews |d 2023-08-29 |
| 915 | _ | _ | |a WoS |0 StatID:(DE-HGF)0113 |2 StatID |b Science Citation Index Expanded |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0150 |2 StatID |b Web of Science Core Collection |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)1030 |2 StatID |b Current Contents - Life Sciences |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)1190 |2 StatID |b Biological Abstracts |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0160 |2 StatID |b Essential Science Indicators |d 2023-08-29 |
| 915 | _ | _ | |a JCR |0 StatID:(DE-HGF)0100 |2 StatID |b NAT METHODS : 2022 |d 2023-08-29 |
| 915 | _ | _ | |a DBCoverage |0 StatID:(DE-HGF)0600 |2 StatID |b Ebsco Academic Search |d 2023-08-29 |
| 915 | _ | _ | |a Peer Review |0 StatID:(DE-HGF)0030 |2 StatID |b ASC |d 2023-08-29 |
| 915 | _ | _ | |a IF >= 40 |0 StatID:(DE-HGF)9940 |2 StatID |b NAT METHODS : 2022 |d 2023-08-29 |
| 920 | 2 | _ | |0 I:(DE-He78)E290-20160331 |k E290 |l NWG Interaktives maschinelles Lernen |x 0 |
| 920 | 1 | _ | |0 I:(DE-He78)E130-20160331 |k E130 |l E130 Intelligente Medizinische Systeme |x 0 |
| 920 | 1 | _ | |0 I:(DE-He78)FM01-20160331 |k FM01 |l DKTK Koordinierungsstelle Frankfurt |x 1 |
| 920 | 1 | _ | |0 I:(DE-He78)E230-20160331 |k E230 |l E230 Medizinische Bildverarbeitung |x 2 |
| 920 | 1 | _ | |0 I:(DE-He78)C060-20160331 |k C060 |l C060 Biostatistik |x 3 |
| 920 | 1 | _ | |0 I:(DE-He78)E290-20160331 |k E290 |l NWG Interaktives maschinelles Lernen |x 4 |
| 920 | 0 | _ | |0 I:(DE-He78)E130-20160331 |k E130 |l E130 Intelligente Medizinische Systeme |x 0 |
| 980 | _ | _ | |a journal |
| 980 | _ | _ | |a VDB |
| 980 | _ | _ | |a I:(DE-He78)E130-20160331 |
| 980 | _ | _ | |a I:(DE-He78)FM01-20160331 |
| 980 | _ | _ | |a I:(DE-He78)E230-20160331 |
| 980 | _ | _ | |a I:(DE-He78)C060-20160331 |
| 980 | _ | _ | |a I:(DE-He78)E290-20160331 |
| 980 | _ | _ | |a UNRESTRICTED |
| Library | Collection | CLSMajor | CLSMinor | Language | Author |
|---|