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000290058 1001_ $$aPeona, Valentina$$b0
000290058 245__ $$aTeaching transposon classification as a means to crowd source the curation of repeat annotation - a tardigrade perspective.
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000290058 520__ $$aThe advancement of sequencing technologies results in the rapid release of hundreds of new genome assemblies a year providing unprecedented resources for the study of genome evolution. Within this context, the significance of in-depth analyses of repetitive elements, transposable elements (TEs) in particular, is increasingly recognized in understanding genome evolution. Despite the plethora of available bioinformatic tools for identifying and annotating TEs, the phylogenetic distance of the target species from a curated and classified database of repetitive element sequences constrains any automated annotation effort. Moreover, manual curation of raw repeat libraries is deemed essential due to the frequent incompleteness of automatically generated consensus sequences.Here, we present an example of a crowd-sourcing effort aimed at curating and annotating TE libraries of two non-model species built around a collaborative, peer-reviewed teaching process. Manual curation and classification are time-consuming processes that offer limited short-term academic rewards and are typically confined to a few research groups where methods are taught through hands-on experience. Crowd-sourcing efforts could therefore offer a significant opportunity to bridge the gap between learning the methods of curation effectively and empowering the scientific community with high-quality, reusable repeat libraries.The collaborative manual curation of TEs from two tardigrade species, for which there were no TE libraries available, resulted in the successful characterization of hundreds of new and diverse TEs in a reasonable time frame. Our crowd-sourcing setting can be used as a teaching reference guide for similar projects: A hidden treasure awaits discovery within non-model organisms.
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000290058 650_7 $$2Other$$aAnnotation
000290058 650_7 $$2Other$$aGenome assembly
000290058 650_7 $$2Other$$aLibrary
000290058 650_7 $$2Other$$aManual curation
000290058 650_7 $$2Other$$aNon-model organism
000290058 650_7 $$2Other$$aTransposable elements
000290058 7001_ $$aMartelossi, Jacopo$$b1
000290058 7001_ $$aAlmojil, Dareen$$b2
000290058 7001_ $$aBocharkina, Julia$$b3
000290058 7001_ $$aBrännström, Ioana$$b4
000290058 7001_ $$aBrown, Max$$b5
000290058 7001_ $$aCang, Alice$$b6
000290058 7001_ $$aCarrasco-Valenzuela, Tomàs$$b7
000290058 7001_ $$aDeVries, Jon$$b8
000290058 7001_ $$aDoellman, Meredith$$b9
000290058 7001_ $$aElsner, Daniel$$b10
000290058 7001_ $$aEspíndola-Hernández, Pamela$$b11
000290058 7001_ $$aMontoya, Guillermo Friis$$b12
000290058 7001_ $$aGaspar, Bence$$b13
000290058 7001_ $$aZagorski, Danijela$$b14
000290058 7001_ $$aHałakuc, Paweł$$b15
000290058 7001_ $$aIvanovska, Beti$$b16
000290058 7001_ $$aLaumer, Christopher$$b17
000290058 7001_ $$aLehmann, Robert$$b18
000290058 7001_ $$aBoštjančić, Ljudevit Luka$$b19
000290058 7001_ $$aMashoodh, Rahia$$b20
000290058 7001_ $$aMazzoleni, Sofia$$b21
000290058 7001_ $$aMouton, Alice$$b22
000290058 7001_ $$aNilsson, Maria Anna$$b23
000290058 7001_ $$aPei, Yifan$$b24
000290058 7001_ $$aPotente, Giacomo$$b25
000290058 7001_ $$0P:(DE-He78)3f65854ed2a08b5c540dd2522b85aad1$$aProvataris, Panagiotis$$b26$$udkfz
000290058 7001_ $$aPardos-Blas, José Ramón$$b27
000290058 7001_ $$aRaut, Ravindra$$b28
000290058 7001_ $$aSbaffi, Tomasa$$b29
000290058 7001_ $$aSchwarz, Florian$$b30
000290058 7001_ $$aStapley, Jessica$$b31
000290058 7001_ $$aStevens, Lewis$$b32
000290058 7001_ $$aSultana, Nusrat$$b33
000290058 7001_ $$aSymonova, Radka$$b34
000290058 7001_ $$aTahami, Mohadeseh S$$b35
000290058 7001_ $$aUrzì, Alice$$b36
000290058 7001_ $$aYang, Heidi$$b37
000290058 7001_ $$aYusuf, Abdullah$$b38
000290058 7001_ $$aPecoraro, Carlo$$b39
000290058 7001_ $$aSuh, Alexander$$b40
000290058 773__ $$0PERI:(DE-600)2536054-1$$a10.1186/s13100-024-00319-8$$gVol. 15, no. 1, p. 10$$n1$$p10$$tMobile DNA$$v15$$x1759-8753$$y2024
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