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000293308 1001_ $$00000-0002-8047-2774$$aJannasch, Anett$$b0
000293308 245__ $$aSetting up an institutional OMERO environment for bioimage data: Perspectives from both facility staff and users.
000293308 260__ $$aOxford [u.a.]$$bWiley-Blackwell$$c2025
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000293308 520__ $$aModern bioimaging core facilities at research institutions are essential for managing and maintaining high-end instruments, providing training and support for researchers in experimental design, image acquisition and data analysis. An important task for these facilities is the professional management of complex multidimensional bioimaging data, which are often produced in large quantity and very different file formats. This article details the process that led to successfully implementing the OME Remote Objects system (OMERO) for bioimage-specific research data management (RDM) at the Core Facility Cellular Imaging (CFCI) at the Technische Universität Dresden (TU Dresden). Ensuring compliance with the FAIR (findable, accessible, interoperable, reusable) principles, we outline here the challenges that we faced in adapting data handling and storage to a new RDM system. These challenges included the introduction of a standardised group-specific naming convention, metadata curation with tagging and Key-Value pairs, and integration of existing image processing workflows. By sharing our experiences, this article aims to provide insights and recommendations for both individual researchers and educational institutions intending to implement OMERO as a management system for bioimaging data. We showcase how tailored decisions and structured approaches lead to successful outcomes in RDM practices.
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000293308 650_7 $$2Other$$aFAIR principles
000293308 650_7 $$2Other$$aOMERO
000293308 650_7 $$2Other$$abioimaging data
000293308 650_7 $$2Other$$aimaging facility
000293308 650_7 $$2Other$$aresearch data management (RDM)
000293308 7001_ $$00009-0005-1473-6427$$aTulok, Silke$$b1
000293308 7001_ $$00000-0001-8094-1254$$aOkafornta, Chukwuebuka William$$b2
000293308 7001_ $$aKugel, Thomas$$b3
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000293308 7001_ $$00000-0002-3328-9467$$aBoissonnet, Tom$$b5
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000293308 7001_ $$00009-0002-8722-9918$$aVogelsang, Andy$$b7
000293308 7001_ $$00000-0001-8214-6414$$aDittfeld, Claudia$$b8
000293308 7001_ $$00009-0004-7321-2490$$aTugtekin, Sems-Malte$$b9
000293308 7001_ $$00000-0003-4544-3967$$aMatschke, Klaus$$b10
000293308 7001_ $$00000-0002-8244-7548$$aPaliulis, Leocadia$$b11
000293308 7001_ $$aThomas, Carola$$b12
000293308 7001_ $$00000-0002-0320-4223$$aLindemann, Dirk$$b13
000293308 7001_ $$00000-0003-3017-0978$$aFabig, Gunar$$b14
000293308 7001_ $$00000-0003-0203-1436$$aMüller-Reichert, Thomas$$b15
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