TY - JOUR AU - Deutscher, Robin C E AU - Meyners, Christian AU - Repity, Maximilian L AU - Sugiarto, Wisely Oki AU - Kolos, Jürgen M AU - Maciel, Edvaldo V S AU - Heymann, Tim AU - Geiger, Thomas M AU - Knapp, Stefan AU - Lermyte, Frederik AU - Hausch, Felix TI - Discovery of fully synthetic FKBP12-mTOR molecular glues. JO - Chemical science VL - 16 IS - 10 SN - 2041-6520 CY - Cambridge PB - RSC M1 - DKFZ-2025-00319 SP - 4256-4263 PY - 2025 N1 - 2025 Jan 13;16(10):4256-4263 AB - Molecular glues are a new drug modality with the potential to engage otherwise undruggable targets. However, the rational discovery of molecular glues for desired targets is a major challenge and most known molecular glues have been discovered by serendipity. Here we present the first fully synthetic FKBP12-mTOR molecular glues, which were discovered from a FKBP-focused, target-unbiased ligand library. Our biochemical screening of >1000 in-house FKBP ligands yielded one hit that induced dimerization of FKBP12 and the FRB domain of mTOR. The crystal structure of the ternary complex revealed that the hit targeted a similar surface on the FRB domain compared to natural product rapamycin but with a radically different interaction pattern. Structure-guided optimization improved potency 500-fold, and led to compounds which initiate FKBP12-FRB complex formation in cells. Our results show that molecular glues targeting flat surfaces can be discovered by focused screening and support the use of FKBP12 as a versatile presenter protein for molecular glues. LB - PUB:(DE-HGF)16 C6 - pmid:39916884 C2 - pmc:PMC11796051 DO - DOI:10.1039/D4SC06917J UR - https://inrepo02.dkfz.de/record/298619 ER -