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000303017 1001_ $$00000-0002-6426-2363$$aMutemi, Kevin Nzumbi$$b0
000303017 245__ $$aA genome resource for the marine annelid Platynereis spp.
000303017 260__ $$aLondon$$bBioMed Central$$c2025
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000303017 520__ $$aThe marine annelid Platynereis dumerilii is a model organism used in many research areas including evolution and development, neurobiology, ecology and regeneration. Here we present the genomes of P. dumerilii (laboratory culture reference and a single individual assembly) and of the closely related P. massiliensis and P. megalops (single individual assembly) to facilitate comparative genomic approaches and help explore Platynereis biology. We used long-read sequencing technology and chromosomal-conformation capture along with extensive transcriptomic resources to obtain and annotate a draft genome assembly of ~ 1.47 Gbp for P. dumerilii, of which more than half represent repeat elements. We predict around 29,000 protein-coding genes, with relatively large intron sizes, over 38,000 non-coding genes, and 105 miRNA loci. We further explore the high genetic variation (~ 3% heterozygosity) within the Platynereis species complex. Gene ontology reveals the most variable loci to be associated with pigmentation, development and immunity. The current work sets the stage for further development of Platynereis genomic resources.
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000303017 650_7 $$2Other$$aPlatynereis
000303017 650_7 $$2Other$$aPlatynereis dumerilii
000303017 650_7 $$2Other$$aAnnelid
000303017 650_7 $$2Other$$aEvo-devo
000303017 650_7 $$2Other$$aGenome
000303017 650_7 $$2Other$$aModel organism
000303017 650_7 $$2Other$$aSpiralia
000303017 650_2 $$2MeSH$$aAnimals
000303017 650_2 $$2MeSH$$aGenome
000303017 650_2 $$2MeSH$$aPolychaeta: genetics
000303017 650_2 $$2MeSH$$aGenomics
000303017 650_2 $$2MeSH$$aMolecular Sequence Annotation
000303017 650_2 $$2MeSH$$aAnnelida: genetics
000303017 650_2 $$2MeSH$$aTranscriptome
000303017 7001_ $$00000-0002-3585-4511$$aSimakov, Oleg$$b1
000303017 7001_ $$00000-0002-2408-4259$$aPan, Leslie$$b2
000303017 7001_ $$00000-0001-9600-6164$$aSantangeli, Luca$$b3
000303017 7001_ $$00000-0002-3830-4152$$aNull, Ryan Wesley$$b4
000303017 7001_ $$00000-0002-3908-7233$$aHandberg-Thorsager, Mette$$b5
000303017 7001_ $$00000-0002-0000-9465$$aVellutini, Bruno Cossermelli$$b6
000303017 7001_ $$00000-0002-6780-0964$$aPeterson, Kevin J$$b7
000303017 7001_ $$00000-0003-0352-3037$$aFromm, Bastian$$b8
000303017 7001_ $$aLarsson, Tomas$$b9
000303017 7001_ $$00000-0003-3391-7571$$aSavage, Emily$$b10
000303017 7001_ $$00000-0001-7724-444X$$aLopez, Mireia Osuna$$b11
000303017 7001_ $$aHercog, Rajna$$b12
000303017 7001_ $$aProvaznik, Jan$$b13
000303017 7001_ $$0P:(DE-He78)e1548f208067e6353af4a22eeb218a50$$aOrdonez Rueda, Diana Angelica$$b14$$udkfz
000303017 7001_ $$aAzevedo, Nayara$$b15
000303017 7001_ $$00000-0002-4647-6640$$aGazave, Eve$$b16
000303017 7001_ $$00000-0002-5995-2140$$aVervoort, Michel$$b17
000303017 7001_ $$00000-0002-2222-9370$$aTomancak, Pavel$$b18
000303017 7001_ $$aTan, Wenhua$$b19
000303017 7001_ $$00000-0002-0915-3316$$aWinkler, Sylke$$b20
000303017 7001_ $$00000-0002-0352-2547$$aBenes, Vladimir$$b21
000303017 7001_ $$00000-0003-1355-8495$$aHui, Jerome$$b22
000303017 7001_ $$00000-0002-0308-8402$$aHelm, Conrad$$b23
000303017 7001_ $$00000-0002-1900-965X$$aÖzpolat, B Duygu$$b24
000303017 7001_ $$00000-0001-7833-050X$$aArendt, Detlev$$b25
000303017 773__ $$0PERI:(DE-600)2041499-7$$a10.1186/s12864-025-11727-2$$gVol. 26, no. 1, p. 665$$n1$$p665$$tBMC genomics$$v26$$x1471-2164$$y2025
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