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@ARTICLE{Mutemi:303017,
      author       = {K. N. Mutemi and O. Simakov and L. Pan and L. Santangeli
                      and R. W. Null and M. Handberg-Thorsager and B. C. Vellutini
                      and K. J. Peterson and B. Fromm and T. Larsson and E. Savage
                      and M. O. Lopez and R. Hercog and J. Provaznik and D. A.
                      Ordonez Rueda$^*$ and N. Azevedo and E. Gazave and M.
                      Vervoort and P. Tomancak and W. Tan and S. Winkler and V.
                      Benes and J. Hui and C. Helm and B. D. Özpolat and D.
                      Arendt},
      title        = {{A} genome resource for the marine annelid {P}latynereis
                      spp.},
      journal      = {BMC genomics},
      volume       = {26},
      number       = {1},
      issn         = {1471-2164},
      address      = {London},
      publisher    = {BioMed Central},
      reportid     = {DKFZ-2025-01464},
      pages        = {665},
      year         = {2025},
      abstract     = {The marine annelid Platynereis dumerilii is a model
                      organism used in many research areas including evolution and
                      development, neurobiology, ecology and regeneration. Here we
                      present the genomes of P. dumerilii (laboratory culture
                      reference and a single individual assembly) and of the
                      closely related P. massiliensis and P. megalops (single
                      individual assembly) to facilitate comparative genomic
                      approaches and help explore Platynereis biology. We used
                      long-read sequencing technology and chromosomal-conformation
                      capture along with extensive transcriptomic resources to
                      obtain and annotate a draft genome assembly of ~ 1.47 Gbp
                      for P. dumerilii, of which more than half represent repeat
                      elements. We predict around 29,000 protein-coding genes,
                      with relatively large intron sizes, over 38,000 non-coding
                      genes, and 105 miRNA loci. We further explore the high
                      genetic variation (~ $3\%$ heterozygosity) within the
                      Platynereis species complex. Gene ontology reveals the most
                      variable loci to be associated with pigmentation,
                      development and immunity. The current work sets the stage
                      for further development of Platynereis genomic resources.},
      keywords     = {Animals / Genome / Polychaeta: genetics / Genomics /
                      Molecular Sequence Annotation / Annelida: genetics /
                      Transcriptome / Platynereis (Other) / Platynereis dumerilii
                      (Other) / Annelid (Other) / Evo-devo (Other) / Genome
                      (Other) / Model organism (Other) / Spiralia (Other)},
      cin          = {W220},
      ddc          = {610},
      cid          = {I:(DE-He78)W220-20160331},
      pnm          = {312 - Funktionelle und strukturelle Genomforschung
                      (POF4-312)},
      pid          = {G:(DE-HGF)POF4-312},
      typ          = {PUB:(DE-HGF)16},
      pubmed       = {pmid:40660120},
      pmc          = {pmc:PMC12257675},
      doi          = {10.1186/s12864-025-11727-2},
      url          = {https://inrepo02.dkfz.de/record/303017},
}