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000305667 1001_ $$0P:(DE-He78)c89678d2f0d5f48718ef60590f58546e$$aFischer, Maximilian$$b0$$eFirst author$$udkfz
000305667 245__ $$au-LINNDA: A protocol for user-optimized lymphoma identification through neural network detection aid.
000305667 260__ $$aCambridge, MA$$bCell Press$$c2025
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000305667 520__ $$aGlioblastoma (GBM) and primary central nervous system lymphoma (PCNSL) are aggressive brain tumors that require neurosurgical treatment. For targeted treatment, biopsy and histopathological identification of the tumor entity are necessary. Here, we present a protocol for diagnosing PCNSL using a convolutional neural network (CNN)-based algorithm. We describe steps for installing the u-LINNDA (user-optimized lymphoma identification through neural network detection aid) algorithm, data preparation and preprocessing, and predicting tumor entities using u-LINNDA. We then detail procedures for predicting tumor identity and inspecting the u-LINNDA report.
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000305667 650_7 $$2Other$$aBioinformatics
000305667 650_7 $$2Other$$aCancer
000305667 650_7 $$2Other$$aComputer sciences
000305667 650_7 $$2Other$$aHealth Sciences
000305667 650_7 $$2Other$$aNeuroscience
000305667 7001_ $$0P:(DE-He78)3c4a7ae5b643f572812632f7bd1b7fa0$$aMaurer, Miriam$$b1
000305667 7001_ $$0P:(DE-He78)4995a888dce6affae1a4f407647c2b5c$$aPeretzke, Robin$$b2$$udkfz
000305667 7001_ $$0P:(DE-He78)c1cb23ea8b8ea6c864196c71e7a32d9e$$aHauptmann, Florian Max$$b3$$udkfz
000305667 7001_ $$aBen-Salah, Chiraz$$b4
000305667 7001_ $$aJakobs, Martin$$b5
000305667 7001_ $$aKaes, Manuel$$b6
000305667 7001_ $$aKarimian-Jazi, Kianush$$b7
000305667 7001_ $$0P:(DE-HGF)0$$aScherer, Moritz Robert$$b8
000305667 7001_ $$aBendszus, Martin$$b9
000305667 7001_ $$0P:(DE-He78)33c74005e1ce56f7025c4f6be15321b3$$aMaier-Hein, Klaus$$b10$$udkfz
000305667 7001_ $$aKrieg, Sandro Manuel$$b11
000305667 7001_ $$aNeumann, Jan-Oliver$$b12
000305667 7001_ $$0P:(DE-He78)64313331bb3bdc0902ff88697f402c92$$aNeher, Peter$$b13$$udkfz
000305667 7001_ $$0P:(DE-He78)d6cc16fa30ad34dc243fd88e7b622f1c$$aNaser, Paul$$b14$$eLast author$$udkfz
000305667 773__ $$0PERI:(DE-600)3053335-1$$a10.1016/j.xpro.2025.104176$$gVol. 6, no. 4, p. 104176 -$$n4$$p104176$$tSTAR Protocols$$v6$$x2666-1667$$y2025
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