D190

Recent Publications

All known publications ...
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http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Book/Journal Article Gómez-Zepeda, D. (First author)DKFZ* ; Beyrle, J.DKFZ* ; Preikschat, A. ; Declercq, A. ; Chen, Y.DKFZ* ; Gabriels, R. ; Martens, L. ; Distler, U. ; Tenzer, S. (Last author)DKFZ*
High-Coverage Immunopeptidomics Using timsTOF Mass Spectrometers with Thunder-DDA-PASEF Boosted by MS2Rescore.
Methods in molecular biology 2980, 115-156 (2026) [DOI:10.1007/978-1-0716-4832-2_5]2026   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Suarez-Carmona, M. (First author)DKFZ* ; Hampel, M.DKFZ* ; Zhang, X.-W.DKFZ* ; Pöchmann, A.DKFZ* ; Grauling-Halama, S. A.DKFZ* ; Valous, N. A.DKFZ* ; Charoentong, P.DKFZ* ; Ferber, D. ; Wissfeld, J. ; Höflich, A.DKFZ* ; Goriely, S. ; Detavernier, A. ; Azouz, A. ; Rongvaux, A. ; Zukunft, S. ; Fleming, I. ; Okun, J. G. ; Baracos, V. ; Heikenwalder, M.DKFZ* ; Zitvogel, L. ; Xu, X. ; Xu, C. ; Volkmar, M.DKFZ* ; Schraivogel, D. ; Steinmetz, L. ; Hamanishi, J. ; Mandai, M. ; Gaida, M. ; Mokry, T.DKFZ* ; Nattenmüller, J.DKFZ* ; Sedlaczek, O.DKFZ* ; Monje, N. ; Schwab, R. ; Hasenburg, A. ; Mavratzas, A. ; Boger, R. J. ; Marmé, F. ; Schott, S. ; Halama, N. (Last author)DKFZ*
Harnessing lipid-driven immunometabolic pathways in omental metastases to enhance immunotherapy in patients with ovarian cancer.
Signal transduction and targeted therapy 11(1), 78 (2026) [10.1038/s41392-026-02594-8]2026   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Distler, U. ; Yoo, H. B. ; Kardell, O. ; Hein, D. ; Sielaff, M. ; Scherer, M. ; Jozefowicz, A. M. ; Leps, C. ; Gómez-Zepeda, D.DKFZ* ; von Toerne, C. ; Merl-Pham, J. ; Barth, T. K. ; Tüshaus, J. ; Giesbertz, P. ; Müller, T.DKFZ* ; Kliewer, G.DKFZ* ; Aljakouch, K.DKFZ* ; Helm, B.DKFZ* ; Unger, H.DKFZ* ; Frey, D.DKFZ* ; Helm, D.DKFZ* ; Schwarzmüller, L.DKFZ* ; Popp, O. ; Qin, D. ; Wudy, S. I. ; Sinn, L. R. ; Mergner, J. ; Ludwig, C. ; Imhof, A. ; Kuster, B. ; Lichtenthaler, S. F. ; Krijgsveld, J.DKFZ* ; Klingmüller, U.DKFZ* ; Mertins, P. ; Coscia, F. ; Ralser, M. ; Mülleder, M. ; Hauck, S. M. ; Tenzer, S. (Last author)DKFZ*
Multicenter evaluation of label-free quantification in human plasma on a high dynamic range benchmark set.
Nature Communications 16(1), 8774 (2025) [10.1038/s41467-025-64501-z]2025     Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Zhang, L. ; Pouya, A. ; Kopetzky, J. ; Bitar, S. ; Wolf, C. ; Bello, F. D. ; Gómez-Zepeda, D.DKFZ* ; Tenzer, S.DKFZ* ; Methner, A.
Increased BNIP3-mediated mitophagy attenuates GDAP1 loss of function - implications for Charcot-Marie-Tooth disease 4A.
Neurobiology of disease 213, 107019 (2025) [10.1016/j.nbd.2025.107019]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Teschner, D. ; Gómez-Zepeda, D.DKFZ* ; Łącki, M. K. ; Kemmer, T. ; Busch, A. ; Tenzer, S.DKFZ* ; Hildebrandt, A.
Rustims: An Open-Source Framework for Rapid Development and Processing of timsTOF Data-Dependent Acquisition Data.
Journal of proteome research 24(5), 2358-2368 (2025) [10.1021/acs.jproteome.4c00966]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Al Hamwi, G. ; Alnouri, M. W. ; Verdonck, S. ; Leonczak, P. ; Chaki, S. ; Frischbutter, S. ; Kolkhir, P. ; Matthey, M. ; Kopp, C. ; Bednarski, M. ; Riedel, Y. K. ; Marx, D. ; Clemens, S. ; Namasivayam, V. ; Gattner, S. ; Thimm, D. ; Sylvester, K. ; Wolf, K.DKFZ* ; Kremer, A. E. ; De Jonghe, S. ; Wenzel, D. ; Kotańska, M. ; Ali, H. ; Herdewijn, P. ; Müller, C. E.
Subnanomolar MAS-related G protein-coupled receptor-X2/B2 antagonists with efficacy in human mast cells and disease models.
Signal transduction and targeted therapy 10(1), 128 (2025) [10.1038/s41392-025-02209-8]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Maier, P. ; Macht, M. ; Beck, S. ; Kolkhir, P. ; Babina, M. ; Kremer, A. E. ; Zahn, D. ; Wolf, K. (Last author)DKFZ*
MRGPRX2 ligandome: Molecular simulations reveal three categories of ligand-receptor interactions.
Journal of structural biology 217(2), 108193 (2025) [10.1016/j.jsb.2025.108193]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Gabele, A. ; Sprang, M. ; Cihan, M. ; Welzel, M. ; Nurbekova, A. ; Romaniuk, K. ; Dietzen, S. ; Klein, M. ; Bündgen, G. ; Emelianov, M. ; Harms, G. ; Rajalingam, K. ; Ziesmann, T. ; Pape, K. ; Wasser, B. ; Gomez-Zepeda, D.DKFZ* ; Braband, K. ; Delacher, M. ; Lemmermann, N. ; Bittner, S. ; Andrade-Navarro, M. A. ; Tenzer, S.DKFZ* ; Luck, K. ; Bopp, T. ; Distler, U.
Unveiling IRF4-steered regulation of context-dependent effector programs in CD4+ T cells under Th17- and Treg-skewing conditions.
Cell reports 44(3), 115407 (2025) [10.1016/j.celrep.2025.115407]2025   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Gómez-Zepeda, D. (First author)DKFZ* ; Michna, T. ; Ziesmann, T. ; Distler, U. ; Tenzer, S. (Last author)DKFZ*
HowDirty: An R package to evaluate molecular contaminants in LC-MS experiments.
Proteomics 24(8), e2300134 (2024) [10.1002/pmic.202300134]2024   BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Meng, Z. (First author)DKFZ* ; Rodriguez Ehrenfried, A. (First author)DKFZ* ; Tan, C. L. (First author)DKFZ* ; Steffens, L. K.DKFZ* ; Kehm, H.DKFZ* ; Zens, S.DKFZ* ; Lauenstein, C.DKFZ* ; Paul, A.DKFZ* ; Schwab, M.DKFZ* ; Förster, J.DKFZ* ; Salek, M.DKFZ* ; Riemer, A.DKFZ* ; Wu, H. ; Eckert, C. ; Leonhardt, C.-S. ; Strobel, O. ; Volkmar, M.DKFZ* ; Poschke, I. (Last author)DKFZ* ; Offringa, R. (Last author)DKFZ*
Transcriptome-based identification of tumor-reactive and bystander CD8+ T cell receptor clonotypes in human pancreatic cancer.
Science translational medicine 15(722), eadh9562 (2023) [10.1126/scitranslmed.adh9562]2023   BibTeX | EndNote: XML, Text | RIS

All known publications ...
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